read#
- mudata.read(filename: PathLike, **kwargs) MuData | AnnData #
Read MuData object from HDF5 file or AnnData object (a single modality) inside it
This function is designed to enhance I/O ease of use. It recognises the following formats:
FILE.h5mu
FILE.h5mu/MODALITY
FILE.h5mu/mod/MODALITY
FILE.h5ad
- OpenFile and BufferedReader from fsspec are supported for remote storage, e.g.:
mdata = read(fsspec.open(“s3://bucket/file.h5mu”)))
- with fsspec.open(“s3://bucket/file.h5mu”) as f:
mdata = read(f)
- with fsspec.open(”https://server/file.h5ad”) as f:
adata = read(f)