to_anndata

Contents

to_anndata#

mudata.to_anndata(mdata: MuData, **kwargs) AnnData#

Convert MuData to AnnData by concatenating modalities

If mdata.axis == 0 (shared observations), concatenate modalities along axis 1 (anndata.concat(axis=1)). If mdata.axis == 1 (shared variables), concatenate datasets along axis 0 (anndata.concat(axis=0)).

Parameters:
  • data (MuData) – MuData object to convert to AnnData

  • kwargs (dict) – Keyword arguments passed to anndata.concat