Install mudata#

Stable version#

mudata can be installed from PyPI with pip:

pip install mudata

Development version#

To use a pre-release version of mudata, install it from from the GitHub repository:

pip install git+


Please consult the details on installing scanpy and its dependencies here. If there are issues that have not beed described, addressed, or documented, please consider opening an issue.

Hacking on mudata#

For hacking on the package, it is most convenient to do a so-called development-mode install, which symlinks files in your Python package directory to your mudata working directory, such that you do not need to reinstall after every change. We use flit as our build system. After installing flit, you can run flit install -s from within the mudata project directory to perform a development-mode install. Happy hacking!