API reference#

Multimodal omics #

`mudata.MuData`([data, feature_types_names, ...])	Multimodal data object
`mudata.utils`

`read`(filename, **kwargs)	Read MuData object from HDF5 file or AnnData object (a single modality) inside it
`read_anndata`(filename, mod[, backed])	Read AnnData object from inside a .h5mu file or from a standalone .h5ad file
`read_h5ad`(filename, mod[, backed])	Read AnnData object from inside a .h5mu file or from a standalone .h5ad file
`read_h5mu`(filename[, backed])	Read MuData object from HDF5 file
`read_zarr`(store)	Read from a hierarchical Zarr array store.
`warn`(message[, category, stacklevel, source])	Issue a warning, or maybe ignore it or raise an exception.
`write`(filename, data)	Write MuData or AnnData to an HDF5 file
`write_anndata`(filename, mod, data)	Write AnnData object to the HDF5 file with a MuData container
`write_h5ad`(filename, mod, data)	Write AnnData object to the HDF5 file with a MuData container
`write_h5mu`(filename, mdata, **kwargs)	Write MuData object to the HDF5 file
`write_zarr`(store, data[, chunks, write_data])	Write MuData or AnnData object to the Zarr store