API reference

Multimodal omics

MuData([data, feature_types_names, as_view, ...])

Multimodal data object

Input/Output

to_anndata(mdata, **kwargs)	Convert MuData to AnnData by concatenating modalities
to_mudata(adata, axis, by)	Convert AnnData to MuData by splitting it along obs or var
concat(mdatas, *[, join, merge, uns_merge, ...])	Concatenates MuData objects.
read(filename, **kwargs)	Read MuData object from HDF5 file or AnnData object (a single modality) inside it
read_h5ad(filename, mod[, backed])	Read AnnData object from inside a .h5mu file or from a standalone .h5ad file (mod=None)
read_anndata(filename, mod[, backed])	Read AnnData object from inside a .h5mu file or from a standalone .h5ad file (mod=None)
read_h5mu(filename[, backed])	Read MuData object from HDF5 file
read_zarr(store)	Read from a hierarchical Zarr array store.
write(filename, data)	Write MuData or AnnData to an HDF5 file
write_h5ad(filename, mod, data)	Write AnnData object to the HDF5 file with a MuData container
write_anndata(filename, mod, data)	Write AnnData object to the HDF5 file with a MuData container
write_h5mu(filename, mdata, **kwargs)	Write MuData object to the HDF5 file
write_zarr(store, data[, chunks, write_data])	Write MuData or AnnData object to the Zarr store